MGen: Symptoms, Testing, and Treatment Explained

MGen: The Sexually Transmitted Infection You Can’t Afford to Ignore

Written by: Dr. Brian Steixner

Key Takeaways

MGen (Mycoplasma genitalium) is an emerging sexually transmitted infection that often flies under the radar.

It causes urethritis, cervicitis, and PID, and can lead to pelvic inflammatory disease infertility.

Mycoplasma genitalium symptoms aren’t always obvious — many people are asymptomatic.

Resistance is rising, making Mgen treatment more complex.

Mgen NAAT testing with a test of cure is the current gold standard.

Condoms, regular STI screening, and partner treatment remain essential.

Welcome to the New Kid on the STI Block

When people talk about sexually transmitted infections, the usual suspects dominate the conversation: chlamydia, gonorrhea, syphilis. They’re like the classic rock of STIs — old, familiar, and unfortunately still playing. But there’s a newer act making waves: MGen, short for Mycoplasma genitalium.

This microscopic mischief-maker has been hanging out in the shadows since the 1980s, quietly causing trouble in urethras, cervixes, rectums, and reproductive futures. Now it’s showing up more often in clinic reports and raising alarms because of one nasty little twist: antibiotic resistant STIs are on the rise, and MGen is leading the encore.

So let’s talk about what it is, how it spreads, what it does to your body, and most importantly, how you can protect yourself. Spoiler: condoms are still the MVP, and yes, testing matters even when you feel fine.

What Exactly Is MGen?

Think of MGen as the minimalistic bacteria of the STI world. It’s tiny, lacks a cell wall, and slips past immune defenses like a sneaky concert crasher. That lack of a wall also makes it naturally resistant to certain antibiotics (looking at you, beta-lactams).

Where does it hang out? The urethra, cervix, endometrium, and rectum. It causes irritation, inflammation, and in too many cases, long-term reproductive damage if left untreated. Because culturing it in the lab is slow and messy, the go-to detection method is Mgen NAAT testing — nucleic-acid amplification tests that spot bacterial DNA or RNA.

How Common Is Mycoplasma Genitalium?

The global prevalence of Mycoplasma genitalium is estimated at around 1% of adults, but it climbs dramatically in certain groups.

  • Men who have sex with men (MSM)

  • Sex workers

  • People attending STI clinics (where rates can exceed 10%)

The scary part? Antibiotic resistance is spreading too. Studies in 2024 found macrolide resistant Mycoplasma genitalium clustering in North America, Western Europe, and Asia. Resistance patterns basically follow where antibiotics have been overused, which makes sense but also makes treatment trickier.

How Does MGen Spread?

Like its better-known cousins, MGen infection spreads through unprotected vaginal, anal, and sometimes oral sex. The risk rises with:

  • Multiple or new partners

  • Previous STI diagnoses

  • Sex without condoms

  • Commercial sex work

And because MGen often tags along with other infections like chlamydia or gonorrhea, a positive test for one STI should cue your provider to check for this stealthy roommate as well.

Mycoplasma Genitalium Symptoms: What to Watch For

In Men

  • Burning or irritation when peeing

  • Urethral itching or a clear/white discharge

  • Mild testicular or scrotal discomfort

  • Sometimes no symptoms at all (up to 40% of men are asymptomatic)

If untreated, persistent urethritis can harm sperm motility and potentially impact fertility.

In Women

  • Cervicitis causes like abnormal discharge or contact bleeding

  • Painful urination or frequent urination

  • Signs of pelvic inflammatory disease: lower abdominal pain, fever, painful sex

  • Post-coital bleeding

Half of infected women have no symptoms. But long-term infection can lead to pelvic inflammatory disease infertility , ectopic pregnancy, and scarring of the fallopian tubes.

Why You Should Care: Complications That Stick Around

  • Pelvic Inflammatory Disease and Infertility : Women with MGen infection are 67% more likely to develop PID. Scarring from ongoing inflammation can block fallopian tubes, raising the risk of infertility and ectopic pregnancy.
  • Persistent Urethritis in Men : Left unchecked, inflammation can travel up to the epididymis, potentially impacting sperm transport.
  • Higher HIV Risk : Genital inflammation from MGen makes HIV transmission easier.

This isn’t just an “oops, take a pill and move on” situation. Left alone, MGen can mess with your future health in big ways.

MGen vs Chlamydia: Spot the Difference

The symptoms can look eerily similar. Both can cause urethritis, cervicitis, or PID. But MGen vs chlamydia matters because the treatments aren’t the same. Standard chlamydia antibiotics don’t always work for MGen, especially with rising resistance. That’s why Mgen NAAT testing is crucial for accurate diagnosis.

Testing: The Gold Standard

Since culturing is a nightmare, detection relies on NAATs. FDA-cleared assays like Aptima® can test:

  • First-void urine

  • Vaginal or cervical swabs

  • Urethral swabs

  • Rectal swabs

Many NAATs now include resistance mutation testing, which helps guide whether you’ll need azithromycin, doxycycline, or moxifloxacin. A test of cure STI follow-up is standard about 3 weeks after treatment to confirm the infection is gone.

Antibiotic Resistance: MGen’s Nasty Party Trick

MGen mutates quickly. Single-nucleotide changes in its 23S rRNA gene lead to macrolide resistance . On top of that, fluoroquinolone resistance is rising, with some studies showing dual resistance over 20%.

Without resistance-guided therapy, treatment failure rates can hit 40%. Which is why doctors are stressing: get tested, get the right antibiotics, and come back for your follow-up.

MGen Treatment: What Works in 2025

Here’s the current playbook:

  1. Doxycycline 100 mg twice daily for 7 days (to knock down the bacterial load).

  2. If resistant mutations are found: Moxifloxacin 400 mg daily for 7 days.

  3. If no resistance: Extended azithromycin regimen.

Pregnant patients need specialist guidance, as some antibiotics aren’t safe during pregnancy. And remember: always do a test of cure about 21 days later.

Prevention: Still Sexy, Still Smart

  • Condoms STI prevention : they cut down risk dramatically (though not 100%).
  • Regular screening : especially if you have multiple partners.
  • Partner testing and treatment : avoid ping-pong infections.
  • Skip the douching : it disrupts vaginal defenses.
  • See a doctor early : don’t wait for symptoms to worsen.

Fertility and Long-Term Health

MGen is a buzzkill for reproductive plans. In women, it scars tubes and raises infertility risk. In men, it can reduce sperm quality. Fertility clinics are increasingly adding Mycoplasma genitalium screening into unexplained infertility workups. Because nothing says “romance killer” like invisible bacteria messing with your family plans.

The Public Health Debate

Should everyone be screened for MGen? Right now, guidelines suggest targeted screening:

  • Symptomatic men with urethritis

  • Women with cervicitis or PID

  • MSM with proctitis

  • Partners of confirmed cases

It’s not as routine as chlamydia or gonorrhea testing yet, but experts are calling MGen one of the most emerging sexually transmitted infections to watch.

Future Outlook: Drugs, Tests, Maybe a Vaccine

New antibiotics like zoliflodacin and gepotidacin are showing promise. CRISPR-based diagnostics may soon allow point-of-care resistance testing. And while a vaccine isn’t on pharmacy shelves yet, researchers are working on it. Until then, safer sex, regular testing, and honest conversations are your best defense.

Conclusion: Don’t Sleep on MGen

Here’s the bottom line: MGen is small, stealthy, and more common than most people realize. Left untreated, it can wreck reproductive health and spread antibiotic resistance like wildfire.

The good news? Testing is accessible, treatment is available, and prevention still works. Protect yourself with condoms, regular STI screens, and honest conversations with partners. If you’re sexually active with multiple partners, add MGen to your list of “things I check for along with chlamydia and gonorrhea.”

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Frequently Asked Questions

Is MGen the same as chlamydia?

No. They look similar symptom-wise, but require different tests and antibiotics. That’s why MGen vs chlamydia matters in diagnosis.

Can I clear MGen without treatment?

Rarely. Some people clear it spontaneously, but most infections persist and risk complications.

Do condoms fully protect against MGen infection?

They lower the risk significantly, but not 100%. The bacteria can infect areas condoms don’t cover.

How soon can I test after exposure?

Mgen NAAT testing is reliable 7–14 days post-exposure. Testing too early risks a false negative.

What’s the best MGen treatment?

Resistance-guided antibiotics: doxycycline first, then moxifloxacin or azithromycin depending on resistance markers.

Why is MGen linked to infertility?

Chronic infection causes inflammation and scarring, leading to blocked fallopian tubes in women and reduced sperm quality in men.

Dr. Joshua Gonzalez

Dr. Joshua Gonzalez

Dr. Joshua Gonzalez is a board-certified urologist who is fellowship-trained in Sexual Medicine and specializes in the management of male and female sexual dysfunctions. He completed his medical education at Columbia University and his urological residency at the Mount Sinai Medical Center. Throughout his career, Dr. Gonzalez has focused on advocating for sexual health and providing improved healthcare to the LGBTQ+ community.

Dr. Brian Steixner

Dr. Brian Steixner

Dr. Brian Steixner is a board-certified urologist and an expert in men’s sexual medicine. He completed his General Surgery and Urology training at The University of Pennsylvania and The Children’s Hospital of Philadelphia, one of the busiest and most comprehensive programs in the nation. During his career, Brian has treated thousands of men with sexual health issues including male factor infertility.

Frequently Asked Questions

Dr. Gonzalez Answers

Popstar Labs cofounder Dr. Joshua Gonzalez is a board-certified urologist and Sexual Medicine expert, here to answer your questions

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